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77. Tavakoli, M.; Chiu, Y. T. T.; Baldi, P.; Carlton, A. M.; Van Vranken, D. L. (2023) RMechDB: A Public Database of Elementary Radical Reaction Steps. J. Chem. Inf. Model. 63, 1114–1123.
76. Tavakoli, M.; Mood, A.; Van Vranken, D. ; Baldi, P. (2022) Quantum Mechanics and Machine Learning Synergies: Graph Attention Neural Networks to Predict Chemical Reactivity. J. Chem. Inf. Model. 62, 2121–2132.
75. Combs, J. R.; Lai, Y.-C.; Van Vranken, D. L. (2021) Tandem Insertion/[3,3]-Sigmatropic Rearrangement Involving the Formation of Silyl Ketene Acetals by Insertion of Rhodium Carbenes into S–Si Bonds. Org. Lett. 23, 2841-2845.
74. Kadish, D.; Mood, A. D.; Tavakoli, M.; Gutman, E. S.; Baldi, P.; Van Vranken, D. L. (2021) Methyl Cation Affinities of Canonical Organic Functional Groups. J. Org. Chem., 86, 3721–3729.
73. Mood, A. D.; Tavakoli, M.; Gutman, E. S.; Kadish, D.; Baldi, P.; Van Vranken, D. L. (2020) Methyl Anion Affinities of the Canonical Organic Functional Groups. J. Org. Chem., 85, 4096-4102.
72. Arredondo, V.; Roa, D.; Gutman, E. S.; Huynh, N. O.; Van Vranken, D. L. (2019) Total Synthesis of (±)-Brazilin using a [4+1] Palladium-Catalyzed Carbenylative Annulation. J. Org. Chem., 84, 14745-14759.
71. Arredondo, V.; Roa, D.; Yan, S.; Liu-Smith, F.; Van Vranken, D. L. (2019) Total Synthesis of (±)- Pestalachloride C and (±)-Pestalachloride D through a Biomimetic Knoevenagel/Hetero Diels-Alder Cascade Org. Lett. 21, 1755-1759.
70. Fooshee, D.; Mood, A.; Gutman, E.; Tavakoli, M.; Urban, G.; Liu, F.; Huynh, N.; Van Vranken, D. L.; Baldi, P. (2018) Deep learning for chemical reaction prediction Mol. Sys. Des. Eng. 3, 442-452.
69. Arredondo, V. A.; Hiew, S. C.; Gutman, E. S.; Premachandra, I. D. U. A.; Van Vranken, D. L. (2017) Enantioselective Palladium-Catalyzed Carbene Insertion into the N-H Bonds of Aromatic Heterocycles. Angew. Chem. Int. Ed. 56, 4156 –4159.
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67. Mood, A. D.; Premachandra, I. D. U. A.; Hiew, S. C.; Wang, F.-Q.; Scott, K. A.; Oldenhuis, N. J.; Liu, H.; Van Vranken, D. L. (2017) Potent Antifungal Synergy of Phthalazinone and Isoquinolones with Azoles Against Candida albicans. ACS Med. Chem. Lett. 8, 168-173.
66. Premachandra, I. D. U. A.; Nguyen, T.; Shen, C.; Gutman, E.; Van Vranken, D. L. (2015) Carbenylative Amination and Alkylation of Vinyl Iodides via Palladium Alkylidene Intermediates. Org. Lett. 17, 5464-5467.
65. Premachandra, I. D. U. A.; Scott, K. A.; Shen, C.; Wang, F.-Q.; Lane, S.; Liu, H.; Van Vranken, D. L. (2015) Potent Synergy between Spirocyclic Pyrrolidinoindolinones and Fluconazole against Candida albicans. ChemMedChem. 10, 1672-1686.
64. Kitamura, M.; Yuasa, R; Van Vranken, D. L. (2014). Synthesis of the Cyclic Prenylguanidine Nitensidine E using a Palladium-Catalyzed Carbenylative Amination. Tetrahedron Lett. 56, 3027-3031.
63. Gutman, E. S.; Arredondo, V.; Van Vranken, D. L. (2014). Cyclization of η3-Benzylpalladium Intermediates Derived from Carbene Insertion. Org. Lett. 16, 5498–5501.
62. Khanna, A.; Premachandra, I. D. U. A.; Sung, P. D.; Van Vranken, D. L. (2013). Palladium-Catalyzed Bis-cyclization/Dimerization Reactions of ω-Aminovinyl Halides. Org. Lett. 15, 3694-3697.
61. Khanna, A.; Premachandra, I. D. U. A.; Sung, P. D.; Van Vranken, D. L. (2013). Palladium-Catalyzed Catellani Aminocyclopropanation Reactions with Vinyl Halides. Org. Lett. 15, 3158-3161.
60. Van Vranken, D. L.; Weiss, G. A. Introduction to Bioorganic Chemistry and Chemical Biology. Garland Science: New York, 2012.
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58. Kudirka, R.; Devine, S. K. J.; Adams, C. S.; Van Vranken, D. L. (2009). Palladium-Catalyzed Insertion of α-Diazoesters into Vinyl Halides to Generate α,β-Unsaturated-γ-Amino Esters. Angew. Chem. Int. Ed. 48, 3677-3680.
57. Juskowiak, G. L., II, McGee, C. J., Greaves, J., Van Vranken, D. L. (2008). Synthesis, Screening, and Sequencing of Cysteine-Rich One-Bead One-Compound Peptide Libraries. J. Comb. Chem. 10, 726-731.
56. Devine, S. K. J., Van Vranken, D. L. (2008). Palladium-Catalyzed Carbene Insertion and Trapping with Carbon Nucleophiles. Organic Letters, 10(10), 1909-1911.
55. Kudirka, R., Van Vranken, D. L. (2008). Palladium-Catalyzed Cyclization Reactions Involving Palladium-Catalyzed Carbene Insertion into Aryl Halides. Journal of Organic Chemistry, 73(9), 3585-3588.
54. Devine, S. K., Van Vranken, D. L. (2007). Palladium-Catalyzed Carbene Insertion into Vinyl Halides and Trapping with Amines. Org. Lett., 9, 2047-2049.
53. Fernandes, N., Bailey, D. E., Van Vranken, D. L., Allbritton, N. L. (2007) Use of Docking Peptides to Design Modular Substrates with High Efficiency for Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase. ACS Chemical Biology, 2(10), 665–673.
52. Zhang, C., Albermann, C., Gu, X., Peters, N. R., Chisholm, J. D., Gilbert, E. J., Van Vranken, D. L., Thorson, J. (2006). RebG and RebM-Catalyzed Indolocarbazole Diversification. ChemBiochem, 7, 795-804.
51. Bacci, J. P., Kearney, A. M., Van Vranken, D. L. (2005). Efficient Two-Step Synthesis of 9-Aryl-6-hydroxy-3H-xanthen-3-one Fluorophores. J. Org. Chem., 70, 9051-9053.
50. Saleh, A. Z., Greenman, K. L., Billings, S., Van Vranken, D. L., Krolewski, J. J. (2005). Binding of Madindoline A to the Extracellular Domain of gp130. Biochemistry, 44, 10822-10827.
49. Greenman, K. L., Van Vranken, D. L. (2005). Palladium-Catalyzed Carbene Insertion into Benzyl Bromides. Tetrahedron, 61, 6438-6441.
48. Van Vranken, D. L. (2004). Polychlorinated biphenyls inhibit amyloid fibril formation. Chemistry & Biology, 11, 1604-1606.
47. Greenman, K. L., Hach, D. M., Van Vranken, D. L. (2004). Synthesis of Phakellistatin 13 and Oxidation to Phakellistatin 3 and Isophakellistatin 3. Org. Lett., 6, 1713-1716.
46. Juskowiak, G. L., Stachel, S. J., Tivitmahaisoon, P., Van Vranken, D. L. (2004). Fluorogenic Peptide Sequences – Transformation of Short Peptides into Fluorophores Under Ambient Photooxidative Conditions. J. Am. Chem. Soc., 126, 550-556.
45. McComas, C. C., Van Vranken, D. L. (2003). Application of Chiral Lithium Amide Bases to the Thia-Sommelet Dearomatization Reaction. Tetrahedron Lett., 44/45, 8203-8205.
44. Yoburn, J. C., Van Vranken, D. L. (2003). Synthesis of Dityrosine Cross-Linked Peptide Dimers Using the Miyaura-Suzuki Reaction. Org. Lett., 5, 2817-2820.
43. Bacci, J., Greenman, K. L., Van Vranken, D. L. (2003). Iron(II)-Catalyzed Sulfimidation and [2,3]-Sigmatropic Rearrangement of Propargyl Sulfides with t-Butoxycarbonylazide. Access to N-Allenylsulfenimides. J. Org. Chem., 68, 4955-4958.
42. Yoburn, J. C., Tian, W., Brower, J. O., Nowick, J. S., Glabe, C. G., Van Vranken, D. L. (2003). Dityrosine Crosslinked Aß Peptides: Fibrillar Beta Structure in A((1-40) is Conducive to Formation of Dityrosine Crosslinks, but a Dityrosine Crosslink in A((8-14) does not Induce Beta Structure. Chem. Res. Toxicol., 16, 531-535.
41. Facompre, M., Carrasco, C., Vezin, H., Chisholm, J. D., Yoburn, J. C., Van Vranken, D. L., Bailly, C. (2003). Indolocarbazole Glycosides in Inactive Conformations. ChemBiochem, 4, 386-395.
40. Yoburn, J. C., Deb, S., Manfield, I. W., Stockley, P. G., Van Vranken, D. L. (2003). A Biaryl Peptide Crosslink in a MetJ Peptide Model Confers Cooperative, Nonspecific Binding to DNA that Ablates both Repressor Binding and in vitro Transcription. Bioorg. Med. Chem., 11, 811-816.
39. Facompre, M., Carrasco, C., Colson, P., Houssier, C., Chisholm, J. D., Van Vranken, D. L., Bailly, C. (2002). DNA binding and topoisomerase I poisoning activities of novel disaccharide indolocarbazoles. Molecular Pharmacol., 62, 1215-1227.
38. Perales, J. B., Makino, F. N., Van Vranken, D. L. (2002). Convergent Stereocontrol in Peterson Olefinations. Application to the Synthesis of (±)-3-Hydroxybakuchiol and Corylifolin. J. Org. Chem, 67, 6711-6717.
37. Presley Bodnar, A. L., Gilbert, E. J., Yoburn, J. C., Van Vranken, D. L. (2002). Synthesis and Study of a Gramicidin B Mutant Possessing a Ditryptophan Crosslink. J. Peptide Sci., 8, 510-520.
36. McComas, C. C., Perales, J. B., Van Vranken, D. L. (2002). Synthesis of (±)-Madindolines and Chemical Models. Studies of Chemical Reactivity. Org. Lett., 4, 2337-2340.
35. Carrasco, C., Facompré, M., Chisholm, J. D., Van Vranken, D. L., Wilson, D. W., Bailly, C. (2002). DNA sequence recognition by the indolocarbazole antitumor antibiotic AT2433-B1 and its diastereoisomer. Nuc. Acids Res., 30, 1774-1781.
34. Matthews, J. H., Dinh, T. D., Tivitmahaisoon, P., Ziller, J. W., Van Vranken, D. L. (2001). Intramolecular Ditryptophan Crosslinks Enforce Two Types of Antiparallel Beta Structures. Chemistry & Biology, 8, 1071-1079.
33. Perales, J. B., Van Vranken, D. L. (2001). Thioether-Directed Platinum-Catalyzed Hydrosilylation of Olefins. J. Org. Chem., 66, 7270-7274.
32. Prabharasuth, R., Van Vranken, D. L. (2001). Iron-Catalyzed Reaction of Propargyl Sulfides and Trimethylsilyldiazomethane. J. Org. Chem., 66, 5256-5258.
31. Greenman, K. L., Carter, D. S., Van Vranken, D. L. (2001). Palladium-Catalyzed Insertion Reactions of Trimethylsilyldiazomethane. Tetrahedron, 57, 5219-5225.
30. Chisholm, J. D., Van Vranken, D. L. (2000). Regiocontrolled Synthesis of the Antitumor Antibiotic AT2433-A1. J. Org. Chem, 65, 7541-7553.
29. McComas, C. C., Ziller, J. W., Van Vranken, D. L. (2000). Neutral Ru(η5-pyrrole) Complexes. Synthesis and Structure of Diazaruthenocenes and Ru(1-3:5,6- η5-C8H11)( η5-pyrrole) Complexes. Organomet., 19, 2853-2857.
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27. Carter, D. S., Van Vranken, D. L. (1999). Synthesis of Homofascaplysin C and Indolo[2, 3-a]carbazole from Ditryptophans. J. Org. Chem., 64, 8537-8545.
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24. Stachel, S. J., Stockwell, S. A., Van Vranken, D. L. (1999). The Fluorescence of Scorpions and Cataractogenesis. Chemistry & Biology, 6, 531-539.
23. Stachel, S. J., Ziller, J. W., Van Vranken, D. L. (1999). Synthesis of a Chiral C3 Triethanolamine and its Silatrane Derivatives. Tetrahedron Lett., 40, 5811-5812.
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